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Biospecimen
collection_date
inflammation
media
project
sample_key
sample_tissue_type
sample_type
specimen_area_biopsy
type_key
volume
Clinical
age_at_diagnosis
autoimmune
breastfed
consanguinity
disease_activity_behavior
disease_activity_location
ethnicity
external_share
extraintestinal_manifestations
family_id
gi_phenotype
gi_surgeries
growth_delay
ibd_history
immunodeficiency
individual_id
jewish_origin
local_id
participant_id
participant_role
perianal_involvement
race
sex
site
upper_disease_type
Experimental_Data
DV200
RIN
library_preparation_method
ratio260over230
ratio260over280
rna_batch
rna_isolation_kit
File_Annotation_Template
Bulk_ Rnaseq_Counts_File_Annotations
Bulk_ Rnaseq_Raw_File_Annotations
Metadata_File_Annotations
File_Annotations
file_format
metadata_type
resource_type
NGS
alignment_information
analysis_thresholds
analysis_type
assay
data_subtype
data_type
duplication_rate
genomic_sex
is_stranded
kit_number
library_batch
library_id
library_prep
library_type
library_version
mapped_reads
median_genes
median_umis
nucleic_acid_source
number_cells
platform
rRNA_rate
ratio_mitochondria
read_length
read_strand_origin
reference_set
run_type
sample_barcode
sample_status
sequencing_batch
total_reads
total_unmapped_reads
unique_genes
valid_barcode_reads
vendor
Other
filename
Metadata_Template
Biospecimen_Metadata_Template
Bulk_ Rnaseq_Assay_Template
Clinical_Metadata_Template
Medication_History_Metadata_Template
Sc Rnaseq_Assay_Template
Data Curator App
NGS
run_type
run_type
The sequencing read types
[Source]
Key
Key Description
Type
Source
Module
singleEnd
STRING
NGS
pairedEnd
STRING
NGS