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Metadata Templates
Biospecimen Metadata Template
Clinical Metadata Template
Medication History Metadata Template
Metadata File Annotations Template
scRNASeq Assay Metadata Template
scRNASeq Level 1 File Annotations Template
scRNASeq Level 3 File Annotations Template
Attributes
adalimumab
adalimumab_change
adalimumab_use
age_at_diagnosis
alignment_reference
amoxicillin
amoxicillin_change
amoxicillin_use
assay
assay_metadata_synID
autoimmune
avg_reads_cell
azathioprine
azathioprine_change
azathioprine_use
balsalazide
balsalazide_change
balsalazide_use
biospecimen_metadata_synID
breastfed
cell_count_1mL
cellranger_output_class
certolizumab
certolizumab_change
certolizumab_use
cholestyr
cholestyr_change
cholestyr_use
ciproflox
ciproflox_change
ciproflox_use
collection_age
collection_id
collection_num
confident_exonic
confident_intergenic
confident_intronic
confident_reads
confident_transcriptome
consanguinity
cyclospa
cyclospa_change
cyclospa_use
data_code
data_generator
data_level
data_type
digestion_cdna_date
disease_activity_behavior
disease_activity_location
estimated_cells
ethnicity
external_share
extraintestinal_manifestations
family_id
file_format
Filename
fk506
fk506_change
fk506_use
fragment_size_bp
genes_detected
gex_con_ng_uL
gi_phenotype
gi_surgeries
golimumab
golimumab_change
golimumab_use
growth_delay
i5_index
i7_index
ibd_history
immunodeficiency
individual_id
inflammation
infliximab
infliximab_change
infliximab_use
intrasterd
intrasterd_change
intrasterd_use
jewish_origin
lenalidomide
lenalidomide_change
lenalidomide_use
library_date
library_prep_method
local_id
media
median_genes_cell
median_UMI_cell
mercap6
mercap6_change
mercap6_use
mesalamine
mesalamine_change
mesalamine_use
metadata_type
methotrex
methotrex_change
methotrex_use
metronida
metronida_change
metronida_use
natalizumab
natalizumab_change
natalizumab_use
olsalazine
olsalazine_change
olsalazine_use
omega3
omega3_change
omega3_use
oralenteric
oralenteric_change
oralenteric_use
oralsterd
oralsterd_change
oralsterd_use
participant_id
participant_role
percent_cell_viability
perianal_involvement
platform
probiotic
probiotic_change
probiotic_use
project
Q30_bc
Q30_read
Q30_UMI
race
reads_antisense
reads_in_cells
reads_mapped
rectalstrd
rectalstrd_change
rectalstrd_use
resource_type
rifampin
rifampin_change
rifampin_use
sample_id
sample_key
sample_num
sample_type
sequencing_saturation
sex
site
software_and_version
specimen_area_biopsy
specimen_modality
sulfasa
sulfasa_change
sulfasa_use
thalidomide
thalidomide_change
thalidomide_use
tocilizumab
tocilizumab_change
tocilizumab_use
total_reads
trimethop
trimethop_change
trimethop_use
type_key
upper_disease_type
ursodiol
ursodiol_change
ursodiol_use
ustekinumab
ustekinumab_change
ustekinumab_use
valid_bc
valid_UMI
vancomycin
vancomycin_change
vancomycin_use
vedolizumab
vedolizumab_change
vedolizumab_use
vial_label
volume
VEOIBD Data Model
Search VEOIBD Metadata Dictionary
Attributes
inflammation
inflammation
inflammation status
Valid Values
Description
Source
inflamed
uninflamed
unknown